compound 25c [PMID: 36649216]   Click here for help

GtoPdb Ligand ID: 12334

Compound class: Synthetic organic
Comment: This compound is a selective inhibitor of mitogen-activated protein kinase 10 (MAPK10, JNK3) [1]. It can cross the blood-brain barrier. MAPK10 (c-Jun N-terminal kinase 3, JNK3) activity has been linked to the development of neurodegenerative diseases like Parkinson's disease (PD). A selective inhibitor would be predicted to mitigate JNK3-mediated pathology, and offer potential as a PD therapeutic. Compound 25c was designed to test this hypothesis.
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Ligand Activity Visualisation Charts

These are box plot that provide a unique visualisation, summarising all the activity data for a ligand taken from ChEMBL and GtoPdb across multiple targets and species. Click on a plot to see the median, interquartile range, low and high data points. A value of zero indicates that no data are available. A separate chart is created for each target, and where possible the algorithm tries to merge ChEMBL and GtoPdb targets by matching them on name and UniProt accession, for each available species. However, please note that inconsistency in naming of targets may lead to data for the same target being reported across multiple charts.

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View interactive charts of activity data across species
2D Structure
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2D Structure

An image of the ligand's 2D structure. For small molecules with SMILES these are drawn using the NCI/CADD Chemical Identifier Resolver. Click on the image to access the chemical structure search tool with the ligand pre-loaded in the structure editor. For other types of ligands, e.g. longer nucleotides and peptides, a manually drawn representation of the molecule may be provided.

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Physico-chemical Properties
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Physico-chemical Properties

Calculated molecular properties are available for small molecules and natural products (not peptides). Properties were generated using the CDK toolkit. All properties were selected to enable the prediction of the Lipinski Rule-of-Five profile or ‘druglikeness’ for each ligand. For more info on each category see the help pages.

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Hydrogen bond acceptors 6
Hydrogen bond donors 2
Rotatable bonds 7
Topological polar surface area 81.33
Molecular weight 541.08
XLogP 6.39
No. Lipinski's rules broken 1
SMILES / InChI / InChIKey
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SMILES / InChI / InChIKey

SMILES (Simplified Molecular Input Line Entry Specification) A specification for unambiguously describing the structure of chemical molecules using short ASCII strings. Canonical SMILES specify a unique representation of the 2D structure without chiral or isotopic specifications. Isomeric SMILES include chiral specification and isotopes.

Standard InChI (IUPAC International Chemical Identifier) and InChIKey InChI is a non-proprietary, standard, textual identifier for chemical substances designed to facilitate linking of information and database searching. An InChIKey is a simplified version of a full InChI, designed for easier web searching.

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Canonical SMILES Clc1ccc(c(c1)Cl)C(=O)N1CCN(CC1)C(=O)c1ccc(cc1)CNc1n[nH]c2c1c(Cl)ccc2
Isomeric SMILES Clc1c2c(n[nH]c2ccc1)NCc1ccc(C(=O)N2CCN(CC2)C(=O)c2c(cc(cc2)Cl)Cl)cc1
InChI InChI=1S/C26H22Cl3N5O2/c27-18-8-9-19(21(29)14-18)26(36)34-12-10-33(11-13-34)25(35)17-6-4-16(5-7-17)15-30-24-23-20(28)2-1-3-22(23)31-32-24/h1-9,14H,10-13,15H2,(H2,30,31,32)
InChI Key YXBAJAWZPVUBDW-UHFFFAOYSA-N
Bioactivity Comments
Compound 25c produces a neuroprotective effect (vis-à-vis motor dysfunction) in an in vivo (mouse) PD model, following intraperitoneal administration.
Selectivity at enzymes
Key to terms and symbols Click column headers to sort
Target Sp. Type Action Value Parameter Concentration range (M) Reference
mitogen-activated protein kinase 10 Hs Inhibitor Inhibition 7.1 pIC50 - 1
⤷ pIC50 7.1 (IC50 8.52x10-8 M) [1]
TRAF2 and NCK interacting kinase Hs Inhibitor Inhibition 6.4 pIC50 - 1
⤷ pIC50 6.4 (IC50 3.67x10-7 M) [1]
mitogen-activated protein kinase 9 Hs Inhibitor Inhibition 5.0 pIC50 - 1
⤷ pIC50 5.0 (IC50 9.27x10-6 M) [1]
mitogen-activated protein kinase 8 Hs Inhibitor Inhibition <5.0 pIC50 - 1
⤷ pIC50 <5.0 (IC50 >1x10-5 M) [1]
Selectivity at catalytic receptors
Key to terms and symbols Click column headers to sort
Target Sp. Type Action Value Parameter Concentration range (M) Reference
fms related receptor tyrosine kinase 4 Hs Inhibitor Inhibition 6.4 pIC50 - 1
⤷ pIC50 6.4 (IC50 4.23x10-7 M) [1]