ADP   Click here for help

GtoPdb Ligand ID: 1712

Synonyms: adenosine diphosphate
PDB Ligand
Compound class: Metabolite
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Ligand Activity Visualisation Charts

These are box plot that provide a unique visualisation, summarising all the activity data for a ligand taken from ChEMBL and GtoPdb across multiple targets and species. Click on a plot to see the median, interquartile range, low and high data points. A value of zero indicates that no data are available. A separate chart is created for each target, and where possible the algorithm tries to merge ChEMBL and GtoPdb targets by matching them on name and UniProt accession, for each available species. However, please note that inconsistency in naming of targets may lead to data for the same target being reported across multiple charts.

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View interactive charts of activity data across species
2D Structure
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2D Structure

An image of the ligand's 2D structure. For small molecules with SMILES these are drawn using the NCI/CADD Chemical Identifier Resolver. Click on the image to access the chemical structure search tool with the ligand pre-loaded in the structure editor. For other types of ligands, e.g. longer nucleotides and peptides, a manually drawn representation of the molecule may be provided.

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Physico-chemical Properties
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Physico-chemical Properties

Calculated molecular properties are available for small molecules and natural products (not peptides). Properties were generated using the CDK toolkit. All properties were selected to enable the prediction of the Lipinski Rule-of-Five profile or ‘druglikeness’ for each ligand. For more info on each category see the help pages.

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Hydrogen bond acceptors 14
Hydrogen bond donors 6
Rotatable bonds 6
Topological polar surface area 252.22
Molecular weight 427.03
XLogP -4.3
No. Lipinski's rules broken 2
SMILES / InChI / InChIKey
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SMILES / InChI / InChIKey

SMILES (Simplified Molecular Input Line Entry Specification) A specification for unambiguously describing the structure of chemical molecules using short ASCII strings. Canonical SMILES specify a unique representation of the 2D structure without chiral or isotopic specifications. Isomeric SMILES include chiral specification and isotopes.

Standard InChI (IUPAC International Chemical Identifier) and InChIKey InChI is a non-proprietary, standard, textual identifier for chemical substances designed to facilitate linking of information and database searching. An InChIKey is a simplified version of a full InChI, designed for easier web searching.

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Canonical SMILES OC1C(COP(=O)(OP(=O)(O)O)O)OC(C1O)n1cnc2c1ncnc2N
Isomeric SMILES O[C@@H]1[C@@H](COP(=O)(OP(=O)(O)O)O)O[C@H]([C@@H]1O)n1cnc2c1ncnc2N
InChI InChI=1S/C10H15N5O10P2/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(24-10)1-23-27(21,22)25-26(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1
InChI Key XTWYTFMLZFPYCI-KQYNXXCUSA-N
Natural/Endogenous Targets
Target
P2Y12 receptor
P2Y13 receptor
P2Y1 receptor
Enzymes Catalysing Reactions with this Compound as a Substrate or Product
Enzyme EC number Reaction Reference
phosphomevalonate kinase 2.7.4.2 ATP + (R)-5-phosphomevalonate = ADP + (R)-5-diphosphomevalonate 3-4
Pyruvate carboxylase
Acetyl-CoA carboxylase 1
Acetyl-CoA carboxylase 2
Propionyl-CoA carboxylase
diphosphomevalonate decarboxylase 4.1.1.33 ATP + (R)-5-diphosphomevalonate -> ADP + isopentenyl diphosphate + CO2 + PO34-
sphingosine kinase 1 2.7.1.91 Sphingosine + ATP = sphingosine 1-phosphate + ADP
dihydrosphingosine + ATP = dihydrosphingosine 1-phosphate + ADP
mevalonate kinase 2.7.1.36 ATP + (R)-mevalonate -> ADP + (R)-5-phosphomevalonate
sphingosine kinase 2 2.7.1.91 Sphingosine + ATP = sphingosine 1-phosphate + ADP
dihydrosphingosine + ATP = dihydrosphingosine 1-phosphate + ADP
ceramide kinase 2.7.1.138 ceramide + ATP -> ceramide 1-phosphate + ADP
Transporters Moving this Compound Across a Lipid Membrane
Transporter EC number Reaction Reference
Peroxisomal membrane protein
SLC25A42
Selectivity at GPCRs
Key to terms and symbols Click column headers to sort
Target Sp. Type Action Value Parameter Concentration range (M) Reference
P2Y12 receptor Ligand is endogenous in the given species Hs Agonist Full agonist 5.9 pKi - 5
⤷ pKi 5.9 [5]
P2Y6 receptor Hs Agonist Partial agonist 4.5 pEC50 - 1
⤷ pEC50 4.5 [1]
P2Y1 receptor Ligand is endogenous in the given species Hs Agonist Full agonist 6.2 – 7.2 pIC50 - 8-9
⤷ pIC50 6.2 – 7.2 [8-9]
P2Y13 receptor Ligand is endogenous in the given species Hs Agonist Full agonist 6.5 pIC50 - 6
⤷ pIC50 6.5 [6]
P2Y11 receptor Ligand is endogenous in the given species Hs Agonist Agonist - - - 2
⤷ [2]
Selectivity at ion channels
Key to terms and symbols Click column headers to sort
Target Sp. Type Action Value Parameter Concentration range (M) Reference
TRPM4 Ligand is endogenous in the given species Hs Gating inhibitor Antagonist 5.7 pIC50 - 7
⤷ pIC50 5.7 [7]
Voltage: 100.0 mV
Additional information and targets (data relate to human unless otherwise stated)
Description Data Reference
Potency order of endogenous ligands at P2Y12 receptor ADP>ATP
Other channel blockers at TRPM4 Intracellular nucleotides including ATP, ADP, adenosine 5'-monophosphate and AMP-PNP with an IC50 range of 1.3-1.9 μM
Potency order of endogenous ligands at P2Y1 receptor ADP>ATP
Potency order of endogenous ligands at P2Y13 receptor ADP>>ATP
Potency order of endogenous ligands at P2Y6 receptor UDP >> UTP > ADP
Potency order of endogenous ligands at P2Y11 receptor ATP>ADP
Ligand mentioned in the following text fields
Mitochondrial nucleotide transporter subfamily overview
P2Y receptors overview
P2Y receptors comments