MC-02479   Click here for help

GtoPdb Ligand ID: 11033

Synonyms: MC 02479 | MC02479 | RWJ 54428 | RWJ-54428
Compound class: Synthetic organic
Comment: MC-02479 (RWJ-54428) is a cephalosporin antibacterial with Gram-positive activity [1,3].
2D Structure
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2D Structure

An image of the ligand's 2D structure. For small molecules with SMILES these are drawn using the NCI/CADD Chemical Identifier Resolver. Click on the image to access the chemical structure search tool with the ligand pre-loaded in the structure editor. For other types of ligands, e.g. longer nucleotides and peptides, a manually drawn representation of the molecule may be provided.

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Physico-chemical Properties
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Physico-chemical Properties

Calculated molecular properties are available for small molecules and natural products (not peptides). Properties were generated using the CDK toolkit. All properties were selected to enable the prediction of the Lipinski Rule-of-Five profile or ‘druglikeness’ for each ligand. For more info on each category see the help pages.

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Hydrogen bond acceptors 10
Hydrogen bond donors 5
Rotatable bonds 11
Topological polar surface area 301.26
Molecular weight 601.01
XLogP -1.72
No. Lipinski's rules broken 0
SMILES / InChI / InChIKey
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SMILES / InChI / InChIKey

SMILES (Simplified Molecular Input Line Entry Specification) A specification for unambiguously describing the structure of chemical molecules using short ASCII strings. Canonical SMILES specify a unique representation of the 2D structure without chiral or isotopic specifications. Isomeric SMILES include chiral specification and isotopes.

Standard InChI (IUPAC International Chemical Identifier) and InChIKey InChI is a non-proprietary, standard, textual identifier for chemical substances designed to facilitate linking of information and database searching. An InChIKey is a simplified version of a full InChI, designed for easier web searching.

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Canonical SMILES NCCSCc1cnccc1SC1=C(C(=O)O)N2C(SC1)C(C2=O)NC(=O)C(=NO)c1nc(sc1Cl)N
Isomeric SMILES NCCSCc1cnccc1SC1=C(C(=O)O)N2C(SC1)C(C2=O)NC(=O)C(=NO)c1nc(sc1Cl)N
InChI InChI=1S/C20H20ClN7O5S4/c21-15-11(26-20(23)37-15)12(27-33)16(29)25-13-17(30)28-14(19(31)32)10(7-35-18(13)28)36-9-1-3-24-5-8(9)6-34-4-2-22/h1,3,5,13,18,33H,2,4,6-7,22H2,(H2,23,26)(H,25,29)(H,31,32)
InChI Key LTUWUNMGTLOPNC-UHFFFAOYSA-N
References
1. Abbanat D, Macielag M, Bush K. (2003)
Novel antibacterial agents for the treatment of serious Gram-positive infections.
Expert Opin Investig Drugs, 12 (3): 379-99. [PMID:12605562]
2. Griffith DC, Harford L, Williams R, Lee VJ, Dudley MN. (2003)
In vivo antibacterial activity of RWJ-54428, a new cephalosporin with activity against gram-positive bacteria.
Antimicrob Agents Chemother, 47 (1): 43-7. [PMID:12499167]
3. Malouin F, Blais J, Chamberland S, Hoang M, Park C, Chan C, Mathias K, Hakem S, Dupree K, Liu E et al.. (2003)
RWJ-54428 (MC-02,479), a new cephalosporin with high affinity for penicillin-binding proteins, including PBP 2a, and stability to staphylococcal beta-lactamases.
Antimicrob Agents Chemother, 47 (2): 658-64. [PMID:12543674]