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PIM447-VHL-01   Click here for help

GtoPdb Ligand ID: 13038

Compound class: Synthetic organic
Comment: PIM447-VHL-01 is a PIM1-selective PROTAC degrader [1]. The PIM-targeting warhead is the inhibitor PIM447, and this is linked to a VHL-binding ligand to engage the von Hippel-Lindau (VHL) Cullin 2-Ring ubiquitin ligase, and direct the PIM protein target for ubiquitin mediated degradation in the proteasome. PIM447-VHL-01 degrades PIM1 with no "hook-effect" at high doses.
2D Structure
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2D Structure

An image of the ligand's 2D structure. For small molecules with SMILES these are drawn using the NCI/CADD Chemical Identifier Resolver. Click on the image to access the chemical structure search tool with the ligand pre-loaded in the structure editor. For other types of ligands, e.g. longer nucleotides and peptides, a manually drawn representation of the molecule may be provided.

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Physico-chemical Properties
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Physico-chemical Properties

Calculated molecular properties are available for small molecules and natural products (not peptides). Properties were generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/). All properties were selected to enable the prediction of the Lipinski Rule-of-Five profile or ‘druglikeness’ for each ligand. For more info on each category see the help pages.

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Hydrogen bond acceptors 14
Hydrogen bond donors 5
Rotatable bonds 24
Topological polar surface area 219.32
Molecular weight 1023.22
XLogP 4.05
No. Lipinski's rules broken 3

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)
SMILES / InChI / InChIKey
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SMILES / InChI / InChIKey

SMILES (Simplified Molecular Input Line Entry Specification) A specification for unambiguously describing the structure of chemical molecules using short ASCII strings. Canonical SMILES specify a unique representation of the 2D structure without chiral or isotopic specifications. Isomeric SMILES include chiral specification and isotopes.

Standard InChI (IUPAC International Chemical Identifier) and InChIKey InChI is a non-proprietary, standard, textual identifier for chemical substances designed to facilitate linking of information and database searching. An InChIKey is a simplified version of a full InChI, designed for easier web searching.

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)

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Canonical SMILES C[C@H]1CC(C[C@H](C1)NC(=O)CCCCCCC(=O)N[C@H](C(=O)N2C[C@@H](C[C@H]2C(=O)N[C@@H](C)C3=CC=C(C=C3)C4=C(C)N=CS4)O)C(C)(C)C)C5=CC=NC=C5NC(=O)C6=CC=C(C(=N6)C7=C(C=CC=C7F)F)F
Isomeric SMILES C[C@H](NC(=O)[C@@H]1C[C@@H](O)CN1C(=O)[C@@H](NC(=O)CCCCCCC(=O)N[C@H]2C[C@@H](C)CC(C2)C3=CC=NC=C3NC(=O)C4=CC=C(F)C(=N4)C5=C(F)C=CC=C5F)C(C)(C)C)C6=CC=C(C=C6)C7=C(C)N=CS7
InChI InChI=1S/C55H65F3N8O6S/c1-31-24-36(39-22-23-59-28-44(39)64-52(70)43-21-20-42(58)49(63-43)48-40(56)12-11-13-41(48)57)26-37(25-31)62-46(68)14-9-7-8-10-15-47(69)65-51(55(4,5)6)54(72)66-29-38(67)27-45(66)53(71)61-32(2)34-16-18-35(19-17-34)50-33(3)60-30-73-50/h11-13,16-23,28,30-32,36-38,45,51,67H,7-10,14-15,24-27,29H2,1-6H3,(H,61,71)(H,62,68)(H,64,70)(H,65,69)/t31-,32-,36?,37-,38+,45-,51+/m0/s1
InChI Key XKKWVBFDKVNKHY-ROPADPDWSA-N

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)
Bioactivity Comments
In prostate cancer cell lines degradation of PIM kinases was found to more effectively induce apoptosis than inhibition of catalytic activity (i.e. kinase inhibitor alone) [1].