glycerol   Click here for help

GtoPdb Ligand ID: 5195

PDB Ligand
Compound class: Metabolite

glycerol is commercially available from our sponsors

2D Structure
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2D Structure

An image of the ligand's 2D structure. For small molecules with SMILES these are drawn using the NCI/CADD Chemical Identifier Resolver. Click on the image to access the chemical structure search tool with the ligand pre-loaded in the structure editor. For other types of ligands, e.g. longer nucleotides and peptides, a manually drawn representation of the molecule may be provided.

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Physico-chemical Properties
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Physico-chemical Properties

Calculated molecular properties are available for small molecules and natural products (not peptides). Properties were generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/). All properties were selected to enable the prediction of the Lipinski Rule-of-Five profile or ‘druglikeness’ for each ligand. For more info on each category see the help pages.

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Hydrogen bond acceptors 3
Hydrogen bond donors 3
Rotatable bonds 2
Topological polar surface area 60.69
Molecular weight 92.05
XLogP -1.88
No. Lipinski's rules broken 0

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)
SMILES / InChI / InChIKey
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SMILES / InChI / InChIKey

SMILES (Simplified Molecular Input Line Entry Specification) A specification for unambiguously describing the structure of chemical molecules using short ASCII strings. Canonical SMILES specify a unique representation of the 2D structure without chiral or isotopic specifications. Isomeric SMILES include chiral specification and isotopes.

Standard InChI (IUPAC International Chemical Identifier) and InChIKey InChI is a non-proprietary, standard, textual identifier for chemical substances designed to facilitate linking of information and database searching. An InChIKey is a simplified version of a full InChI, designed for easier web searching.

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)

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Canonical SMILES OCC(CO)O
Isomeric SMILES OCC(CO)O
InChI InChI=1S/C3H8O3/c4-1-3(6)2-5/h3-6H,1-2H2
InChI Key PEDCQBHIVMGVHV-UHFFFAOYSA-N

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)
Classification Click here for help
Compound class Metabolite
IUPAC Name Click here for help
propane-1,2,3-triol
International Nonproprietary Names Click here for help
INN number INN
444 glycerol
Database Links Click here for help
CAS Registry No. 56-81-5
ChEBI CHEBI:17754
ChEMBL Ligand CHEMBL692
DrugBank Ligand DB04077
DrugCentral Ligand 1316
GtoPdb PubChem SID 178101883
PubChem CID 753
RCSB PDB Ligand GOL
Search Google for chemical match using the InChIKey PEDCQBHIVMGVHV-UHFFFAOYSA-N
Search Google for chemicals with the same backbone PEDCQBHIVMGVHV
Search PubMed clinical trials glycerol
Search PubMed titles glycerol
Search PubMed titles/abstracts glycerol
UniChem Compound Search for chemical match using the InChIKey PEDCQBHIVMGVHV-UHFFFAOYSA-N
UniChem Connectivity Search for chemical match using the InChIKey PEDCQBHIVMGVHV-UHFFFAOYSA-N
Wikipedia Glycerol

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MedChemExpress
Glycerol (links to external site)
Cat. No. HY-B1659