squalene   Click here for help

GtoPdb Ligand ID: 3054

Synonyms: all-trans-squalene | spinacene | trans-squalene
PDB Ligand
Compound class: Metabolite

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2D Structure
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2D Structure

An image of the ligand's 2D structure. For small molecules with SMILES these are drawn using the NCI/CADD Chemical Identifier Resolver. Click on the image to access the chemical structure search tool with the ligand pre-loaded in the structure editor. For other types of ligands, e.g. longer nucleotides and peptides, a manually drawn representation of the molecule may be provided.

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Physico-chemical Properties
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Physico-chemical Properties

Calculated molecular properties are available for small molecules and natural products (not peptides). Properties were generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/). All properties were selected to enable the prediction of the Lipinski Rule-of-Five profile or ‘druglikeness’ for each ligand. For more info on each category see the help pages.

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Hydrogen bond acceptors 0
Hydrogen bond donors 0
Rotatable bonds 15
Topological polar surface area 0
Molecular weight 410.39
XLogP 11.48
No. Lipinski's rules broken 2

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)
SMILES / InChI / InChIKey
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SMILES / InChI / InChIKey

SMILES (Simplified Molecular Input Line Entry Specification) A specification for unambiguously describing the structure of chemical molecules using short ASCII strings. Canonical SMILES specify a unique representation of the 2D structure without chiral or isotopic specifications. Isomeric SMILES include chiral specification and isotopes.

Standard InChI (IUPAC International Chemical Identifier) and InChIKey InChI is a non-proprietary, standard, textual identifier for chemical substances designed to facilitate linking of information and database searching. An InChIKey is a simplified version of a full InChI, designed for easier web searching.

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)

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Canonical SMILES CC(=CCCC=C(CCC=C(CCC=C(C)C)C)C)CCC=C(CCC=C(C)C)C
Isomeric SMILES C/C(=C\CC/C=C(/CC/C=C(/CCC=C(C)C)\C)\C)/CC/C=C(/CCC=C(C)C)\C
InChI InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+
InChI Key YYGNTYWPHWGJRM-AAJYLUCBSA-N

Generated using the Chemistry Development Kit (CDK) (Willighagen EL et al. Journal of Cheminformatics vol. 9:33. 2017, doi:10.1186/s13321-017-0220-4; https://cdk.github.io/)
Classification Click here for help
Compound class Metabolite
IUPAC Name Click here for help
2,6,10,15,19,23-Hexamethyltetracosa-2,6,10,14,18,22-hexaene
Synonyms Click here for help
all-trans-squalene | spinacene | trans-squalene
Database Links Click here for help
CAS Registry No. 111-02-4 (source: Scifinder)
ChEBI CHEBI:15440
ChEMBL Ligand CHEMBL458402
GtoPdb PubChem SID 135651579
LIPID MAPS LMPR0106010002
PubChem CID 638072
RCSB PDB Ligand SQL
Search Google for chemical match using the InChIKey YYGNTYWPHWGJRM-AAJYLUCBSA-N
Search Google for chemicals with the same backbone YYGNTYWPHWGJRM
UniChem Compound Search for chemical match using the InChIKey YYGNTYWPHWGJRM-AAJYLUCBSA-N
UniChem Connectivity Search for chemical match using the InChIKey YYGNTYWPHWGJRM-AAJYLUCBSA-N
Wikipedia Squalene

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MedChemExpress
Squalene (links to external site)
Cat. No. HY-N1214